FTP protocol is not really designed for such things, and becuase of that there is no standard on how to do that.
different FTPD using different commands. some use SITE EXEC <filename>, some use SITE EXECUTE <filename>, some can't do it at all.
your best bet is to consult your specific FTPD documentation/support.
but i would recommend against doing this. with FTP protocol you won't know if your program is running or if there are some errors.
instead i would suggest you use more usual terminal protocols such as SSH for command line or some GUI solution for Windows..
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