nuke is broken since ioftpd dont save owner of files and such so its nothing I can do. Look at your .ioFTPD files in a dir thats uploaded and if its not got the filenames of the dir then it wont be possible to nuke.
give/take I think I fixed some time ago or its some special case again that I forgot. Always try
http://warc.mine.nu/download/ioa.exe and see if that fixes give/take probs
/WarC