I'll make a note of that and see what we can do, due to the way it's designed that's a rather complicated suggestion.
With the new proxy manager this option no longer applied.
For the sites that you want to bypass the proxy set the Proxy Server to "none" via the Site Manager General Tab
Or
You can define a Proxy Server via the Preferences (don't make it default) and then via the Site Manager General Tab assign that proxy server to only the sites you want to use a proxy.
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