I suspect that since you click the links fast FlashFXP is unable to access the data file to update it because another instance is doing the exact same thing. Only one copy of FlashFXP can write to the file at any given time. The only thing I can suggest is that you wait a few seconds before clicking on the next link.
At the default 50 quick connect limit the save should happen extremely fast, however if you increased this limit it may take longer than expected.
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