I've noticed same thing myself (with scripts that take long time to execute) - it's very easy to replicate:
Session 1
Session 2
[00:38:04] site test
[00:38:04] 200-Begin
[00:38:07] site test
[00:38:07] 200-Begin
[00:38:17] 200-Halfway
[00:38:26] 200-End
[00:38:26] 200-Changing stats for user darkone
[00:38:26] 200 Command Successful.
[00:38:26] 200-Halfway
[00:38:26] 200-End
[00:38:26] 200-Changing stats for user ioFTPD
[00:38:26] 200 Command Successful.
Not sure if it's a bug or something else..
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