router shouldn't affect your ability to FXP. forwarding ports will not make any difference to FXP.
what FlashFXP build are you using?
wild guess but if it always stall after PORT command it's possible that your router changes IP address in PORT command from the site ip to your ip.
check your router documentation for any such info.
also check out dslreports netopia hardware forum. they should be able to help you with specific instructions.
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