There are ways it can be done but without knowing the exact way you intend to create this queue or how you envision it to work it is difficult to give you a straight forward answer.
When downloading the logs are you downloading a folder that contains the files or the individual files?
You can en-queue separate delete file/folder operations which can execute after the file transfers.
(File list > right-click menu > EnQueue > Delete)
Once you en-queue the delete operation additional settings can be tweaked by editing the delete operation entry in the queue list. (Queue list > right-click > edit)
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