Did you run the installer directly or from within FlashFXP?
Are you using the regular or portable installation?
If the update installer fails to replace a file due to a sharing or permission error it will not be able to complete the update and it will finish the installation on restart.
There should of been some type of error dialog indicating this, however if running from within FlashFXP the dialog most likely would of been suppressed, but the update launcher stub should of reported an error indicating that a manual install would be required.
If you check within your temp folder there should be a random folder created by the installer and a log file that may indicate the reason the installation was unable to finish.
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