If you are experiencing crashes then it's ioFTPD/window's fault and I'm more than happy to look into it. ioNiNJA is TCL and in theory can't cause crashes directly which is one benefit to scripting languages.
I'll PM you info about sending the crashlogs and I'll see what I can turn up.
I'm not currently aware of any crashing issues with the server. I have identified some specific scenarios that can still lock it up under win2k3 but that doesn't cause a crash.
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