You can't do this with a batch file, but you could do this using the scheduling system in FlashFXP.
Since you're not a registered user I would recommend using the basic scheduler, otherwise you wont be able to do complete automation unless you purchase FlashFXP (due to the shareware notice screen)
Queue the file that you want to transfer, right-click on the queue window, select "Schedule at" set the start and stop time and then click the "start" button.
This is a one time task, so you'll need to repeat the process daily unless you use the full scheduler which is located under the main menu > Tools > Schedule
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