[r4nd0m]

I have fixed the problem myself by editing the C:\ioFTPD\scripts\ioNINJA\MiSC\NiNJALiB.tcl

Go to line 1832 and change from:

		set message [string map[list "%fm$1$2\{$replacing\}" [format %${1}${2}s "$replace"]] $message]
	}
	
	output $message

To:

		set message [string map[list "%fm$1$2\{$replacing\}" [format %${1}${2}s "$replace"]] $message]
    set propercwd "250-"
    append propercwd $message	
	}
	
	output $propercwd

If you like the full file can be grabbed here: http://pastebin.com/m1itjW4V