You can define individual locations for each data file via the windows registry
On Windows 32bit
HKEY_LOCAL_MACHINE\SOFTWARE\FlashFXP\4
On Windows 64bit the location would be
HKEY_LOCAL_MACHINE\SOFTWARE\Wow6432Node\FlashFXP\4
Create a new string value and name it "sites.dat" without quotes and then set the value to the location where you want to store the shared "sites.dat" file, include the path only, i.e. "d:\data\flashfxp\" again without quotes.
This has been throughly tested with FlashFXP v4.0 RC2, however using this method may not work with FlashFXP v3.6.
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