Hello,
Changing folders via a Bookmarked folders doesn't trigger a synchronized folder change but any future folders changes are synchronized.
I created a bookmark where I had the following paths
local: c:\webdev\flashfxp\
remote: /home/flashfxp/
Then turned on synchronized browsing and then clicked my bookmark, it correctly changes the local and remote folders and then clicking on a folder in either local or remote does a synchronized folder change.
I'm not quite sure why its not working right for you. I use this type of scenario for maintaining my website and haven't experienced this issue.
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