exjoe: The "double" spaces you see are to align the time field so the two different formats take up the same width and are indeed valid there. If you google around a bit for examples of directory listings you can find many examples. GNU ls used by linux uses a newer format that any of these shown here now so you'll probably have to skip those examples...
I should mention that ioFTPD will not display directories marked as hidden or system. This is to prevent the server from displaying things like the recycle bin, system info dir, etc if someone ignores the warning about exporting drive letters. Normally these are shown grayed out if you look at them in explorer if you can even see them at all. That might be a reason why the server can see the directory and not complain about it being missing when parsing the .vfs file but not actually showing up later...
As a test, try renaming the d:\Dir4 dir not showing up to something else and create an empty d:\Dir4 dir. If that fixes things and it starts showing up then we can try to figure out what's special/different about the dir...
Just for the record, UTF8 filenames aren't supported so make sure it only has simple ascii chars in the path...
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