Win7+ seems to act differently with regard to the ioFTPD cert. The error message about it already existing I've seen several times. Simply restarting ioFTPD should load the new cert. At this point, I'm convinced you've rebooted at least once as well. The cert from makecert is fine.
I am a bit concerned about why it looks like you can't actually login past the PASS command. I assumed that was because you had the site open/close and perhaps oneline stuff from nxTools installed but something wasn't right. Hence the vanilla server request just to make sure. Can you login and do everything locally fine?
There is a windows firewall for incoming connections and you'll need to add ioFTPD to it's list of exceptions. Can you run other software that accepts incoming connections?
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