When you saved the file did you change the internal name to "Portuguese-European", not just the filename, when you save the language it also sends a copy of the changes to our translation server for easy management, I was unable to find a new submission from you.
It appears that there is a mistake in the way language names are formatted when the name contains a - the following character isn't properly capitalized. This will be addressed in future builds.
I will look into why the text on the certificate dialog isn't translated, off hand I'm really not sure.
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