See if you can reproduce this problem using a different FTP client. It's entirely possible this is an ioFTPD bug, but given the perhaps hundreds of TBs transferred via ioFTPD v6.9.3 I haven't heard of other corruption issue problems. A lot of that would have been rar/sfv which should have caught that kind of thing. For you to see this problem often enough that you noticed it seems odd to me. Given the non-common FTP client see if you can get it to happen with a trial of Flash/Rush/etc just to rule the client out.
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