3.5.3 build 1220 is the latest beta release publicly available, There are newer builds but they are only available to official beta testers.
You should have no problems using build 1220.
A couple factors are whether or not you're using passive mode, sometimes the direction of the connection can be faster one way vs the other. If ftprush is using passive mode for transfers you should use the same mode in flashfxp.
Another setting you can adjust is located in Preferences > Connection > TCP/IP Buffer Size, some values work better than others, its best to start out using default and then work your way up. This value can only be changed while FlashFXP is not connected to a ftp server, if you change it while connected it will have no effect until you restart FlashFXP.
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