From within FlashFXP go to Help/About and then the details tab.
Check the Data Folder location. Make a copy of your old sites.dat and place the copy in this folder. If the copy operation wants to overwrite an existing sites.dat you should probably make a backup copy of it first just in case.
I'm not entirely sure why importing failed to import any of your sites but you can perform the above method to directly copy it without any problems.
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